PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10015893m
Common NameCICLE_v10015893mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 331aa    MW: 35985.2 Da    PI: 7.0193
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10015893mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.85.8e-3449103155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl
  Ciclev10015893m  49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103
                      79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.48546106IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-3248104IPR009057Homeodomain-like
SuperFamilySSF466898.42E-1848103IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-2549104IPR006447Myb domain, plants
PfamPF002491.3E-951102IPR001005SANT/Myb domain
PfamPF143791.8E-23135181IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MYQPNSVPSS SLVRSNSLVH GQHLDCGSSQ MDPMNGGNSL NNNPSLASKQ RLRWTHELHE  60
RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKVDKK  120
ETGDMLSSLD GSSGMQITEA LKLQMEVQKR LHEQLEVQRQ LQLRIEAQGK YLKKIIEEQQ  180
RLSGVLTEAP GSGGSAPASG DNCQEPDKKT DPATPAPTSE SPLQDKAAKE HVPAKSLSLD  240
ESFSSQNEPL TPDSGCNVSS PSQSPKGERS TKKQRVDMET AYAKPEMVLT HPILESSISS  300
SYQQPQNVFD PSSRASVGKE DRLEVSGNDL *
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00252DAPTransfer from AT2G01060Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449962.10.0hypothetical protein CICLE_v10015893mg
TrEMBLV4UB200.0V4UB20_9R
STRINGVIT_00s0475g00040.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87532536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01060.11e-102G2-like family protein